Explore how to setup an epileptic seizure simulation with the TVB graphical user interface. This lesson will show you how to program the epileptor model in the brain network to simulate a epileptic seizure originating in the hippocampus. It will also show how to upload and view mouse connectivity data, as well as give a short introduction to the python script interface of TVB.
Introduction to the Brain Imaging Data Structure (BIDS): a standard for organizing human neuroimaging datasets. This lecture was part of the 2018 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.
NWB: An ecosystem for neurophysiology data standardization
DAQCORD is a framework for the design, documentation and reporting of data curation methods in order to advance the scientific rigour, reproducibility and analysis of the data. This lecture covers the rationale for developing the framework, the process in which the framework was developed, and ends with a presentation of the framework. While the driving use case for DAQCORD was clinical traumatic brain injury research, the framework is applicable to clinical studies in other domains of clinical neuroscience research.
PyNN is a simulator-independent language for building neuronal network models. The PyNN API aims to support modelling at a high-level of abstraction (populations of neurons, layers, columns and the connections between them) while still allowing access to the details of individual neurons and synapses when required. PyNN provides a library of standard neuron, synapse, and synaptic plasticity models which have been verified to work the same on the different supported simulators. PyNN also provides a set of commonly-used connectivity algorithms (e.g. all-to-all, random, distance-dependent, small-world) but makes it easy to provide your own connectivity in a simulator-independent way. This lecture was part of the 7th SpiNNaker Workshop held 3 - 6 October 2017.
This lecture covers computational principles that growth cones employ to detect and respond to environmental chemotactic gradients, focusing particularly on growth cone shape dynamics.
In this lecture you will learn that in developing mouse somatosensory cortex, endogenous Btbd3 translocate to the cell nucleus in response to neuronal activity and oriented primary dendrites toward active axons in the barrel hollow.
In this presentation, the speaker describes some of their recent efforts to characterize the transcriptome of the developing human brain, and and introduction to the BrainSpan project.
This lecture covers NeuronUnit, a library that builds upon SciUnit and integrates with several existing neuroinformatics resources to support validating single-neuron models using data gathered by neurophysiologists.
An introduction to the NeuroElectro project, which aims to organize information on cellular neurophysiology. Speaker: Shreejoy Tripathy
Simultaneously recorded neurons in non-human primates coordinate their spiking activity in a sequential manner that mirrors the dominant wave propagation directions of the local field potentials.
This talk covers statistical analysis of spike train data, the modeling approach GLM, and the problem of assessing neural synchrony.
This talk covers statistical methods for characterizing neural population responses and extracting structure from high-dimensional neural data.
This presentation covers research to understand the activity of single neurons and populations of neurons in the visual system.
Learn how to create a standard extracellular electrophysiology dataset in NWB using Python
Learn how to create a standard calcium imaging dataset in NWB using Python
Learn how to create a standard intracellular electrophysiology dataset in NWB
Learn how to use the icephys-metadata extension to enter meta-data detailing your experimental paradigm
Learn how to create a standard extracellular electrophysiology dataset in NWB using MATLAB
Learn how to create a standard calcium imaging dataset in NWB using MATLAB