The Mouse Phenome Database (MPD) provides access to primary experimental trait data, genotypic variation, protocols and analysis tools for mouse genetic studies. Data are contributed by investigators worldwide and represent a broad scope of phenotyping endpoints and disease-related traits in naïve mice and those exposed to drugs, environmental agents or other treatments. MPD ensures rigorous curation of phenotype data and supporting documentation using relevant ontologies and controlled vocabularies. As a repository of curated and integrated data, MPD provides a means to access/re-use baseline data, as well as allows users to identify sensitized backgrounds for making new mouse models with genome editing technologies, analyze trait co-inheritance, benchmark assays in their own laboratories, and many other research applications. MPD’s primary source of funding is NIDA. For this reason, a majority of MPD data is neuro- and behavior-related.

This lecture covers FAIR atlases, including their background and construction, as well as how they can be created in line with the FAIR principles.

This lesson gives an in-depth introduction of ethics in the field of artificial intelligence, particularly in the context of its impact on humans and public interest. As the healthcare sector becomes increasingly affected by the implementation of ever stronger AI algorithms, this lecture covers key interests which must be protected going forward, including privacy, consent, human autonomy, inclusiveness, and equity. 

This lecture picks up from the previous lesson, providing an overview of neuroimaging techniques and their clinical applications.

This lesson provides a basic introduction to clinical presentation of schizophrenia, its etiology, and current treatment options.

This lecture focuses on the rationale for employing neuroimaging methods for movement disorders.

This lesson contains the first part of the lecture Data Science and Reproducibility. You will learn about the development of data science and what the term currently encompasses, as well as how neuroscience and data science intersect. 

In this lesson, you will learn about the current challenges facing the integration of machine learning and neuroscience. 

JupyterHub is a simple, highly extensible, multi-user system for managing per-user Jupyter Notebook servers, designed for research groups or classes. This lecture covers deploying JupyterHub on a single server, as well as deploying with Docker using GitHub for authentication.

This demonstration walks through how to import your data into MATLAB.

This lesson provides instruction regarding the various factors one must consider when preprocessing data, preparing it for statistical exploration and analyses. 

This tutorial outlines, step by step, how to perform analysis by group and how to do change-point detection.

This tutorial walks through several common methods for visualizing your data in different ways depending on your data type.

This tutorial illustrates several ways to approach predictive modeling and machine learning with MATLAB.

This brief tutorial goes over how you can easily work with big data as you would with any size of data.

In this tutorial, you will learn how to deploy your models outside of your local MATLAB environment, enabling wider sharing and collaboration.

This lesson provides a brief overview of the Python programming language, with an emphasis on tools relevant to data scientists.

This lecture gives an introduction to the FAIR (findability, accessibility, interoperability, and reusability) science principles and examples of their application in neuroscience research. 

The lecture provides an overview of the core skills and practical solutions required to practice reproducible research.

This lecture covers the description and brief history of data science and its use in neuroinformatics.