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In this lesson you will learn how to simulate seizure events and epilepsy in The Virtual Brain. We will look at the paper On the Nature of Seizure Dynamics, which describes a new local model called the Epileptor, and apply this same model in The Virtual Brain. This is part 1 of 2 in a series explaining how to use the Epileptor. In this part, we focus on setting up the parameters.

Difficulty level: Beginner
Duration: 4:44
Speaker: : Paul Triebkorn

This short video walks you through the steps of publishing a dataset on brainlife, an open-source, free and secure reproducible neuroscience analysis platform.

Difficulty level: Beginner
Duration: 1:18
Speaker: :

This video shows how to use the brainlife.io interface to edit the participants' info file. This file is the ParticipantInfo.json file of the Brain Imaging Data Structure (BIDS).

Difficulty level: Beginner
Duration: 0:34
Speaker: :

This video will document the process of running an app on brainlife, from data staging to archiving of the final data outputs.

Difficulty level: Beginner
Duration: 3:43
Speaker: :

This video will document the process of visualizing the provenance of each step performed to generate a data object on brainlife.

Difficulty level: Beginner
Duration: 0:21
Speaker: :

This video will document the process of downloading and running the "reproduce.sh" script, which will automatically run all of the steps to generate a data object locally on a user's machine.

Difficulty level: Beginner
Duration: 3:44
Speaker: :

This brief video walks you through the steps necessary when creating a project on brainlife.io. 

Difficulty level: Beginner
Duration: 1:45
Speaker: :

This brief video rus through how to make an accout on brainlife.io.

Difficulty level: Beginner
Duration: 0:30
Speaker: :

This video will document how to run a correlation analysis between the gray matter volume of two different structures using the output from brainlife app-freesurfer-stats.

Difficulty level: Beginner
Duration: 1:33
Speaker: :

As a part of NeuroHackademy 2020, this lecture delves into cloud computing, focusing on Amazon Web Services. 

Difficulty level: Beginner
Duration: 01:43:59

This talk presents an overview of CBRAIN, a web-based platform that allows neuroscientists to perform computationally intensive data analyses by connecting them to high-performance computing facilities across Canada and around the world.

Difficulty level: Beginner
Duration: 56:07
Speaker: : Shawn Brown

This video demonstrates each required step for preprocessing T1w anatomical data in brainlife.io.

Difficulty level: Beginner
Duration: 3:28
Speaker: :

The Allen Mouse Brain Atlas is a genome-wide, high-resolution atlas of gene expression throughout the adult mouse brain. This tutorial describes the basic search and navigation features of the Allen Mouse Brain Atlas.

Difficulty level: Beginner
Duration: 6:40

The Allen Developing Mouse Brain Atlas is a detailed atlas of gene expression across mouse brain development. This tutorial describes the basic search and navigation features of the Allen Developing Mouse Brain Atlas.

Difficulty level: Beginner
Duration: 6:35
Speaker: : Unknown

This tutorial demonstrates how to use the differential search feature of the Allen Mouse Brain Atlas to find gene markers for different regions of the brain, as well as to visualize this gene expression in three-dimensional space. Differential search is also available for the Allen Developing Mouse Brain Atlas and the Allen Human Brain Atlas.

Difficulty level: Beginner
Duration: 6:31
Speaker: : Unknown

This module covers some basic anatomy such as the brain’s major divisions (brainstem, cerebellum, cerebrum), the cerebral lobes (frontal, temporal, parietal, and occipital), the central and peripheral nervous systems, theories of cognition, and brain orientation terms.

Difficulty level: Beginner
Duration: 11:54
Speaker: : Harrison Canning

This demonstration walks through how to import your data into MATLAB.

Difficulty level: Beginner
Duration: 6:10
Speaker: : MATLAB®

This lesson provides instruction regarding the various factors one must consider when preprocessing data, preparing it for statistical exploration and analyses. 

Difficulty level: Beginner
Duration: 15:10
Speaker: : MATLAB®

This tutorial outlines, step by step, how to perform analysis by group and how to do change-point detection.

Difficulty level: Beginner
Duration: 2:49
Speaker: : MATLAB®

This tutorial walks through several common methods for visualizing your data in different ways depending on your data type.

Difficulty level: Beginner
Duration: 6:10
Speaker: : MATLAB®