The simulation of the virtual epileptic patient is presented as an example of advanced brain simulation as a translational approach to deliver improved results in clinics. The fundamentals of epilepsy are explained. On this basis, the concept of epilepsy simulation is developed. By using an iPython notebook, the detailed process of this approach is explained step by step. In the end, you are able to perform simple epilepsy simulations your own.

Difficulty level: Beginner

Duration: 1:28:53

Speaker: : Julie Courtiol

Course:

Learn how to simulate seizure events and epilepsy in The Virtual Brain. We will look at the paper: On the Nature of Seizure Dynamics which describes a new local model called the Epileptor, and apply this same model in The Virtual Brain. This is part 1 of 2 in a series explaining how to use the Epileptor. In this part, we focus on setting up the parameters.

Difficulty level: Beginner

Duration: 4:44

Speaker: : Paul Triebkorn

As models in neuroscience have become increasingly complex, it has become more difficult to share all aspects of models and model analysis, hindering model accessibility and reproducibility. In this session, we will discuss existing resources for promoting FAIR data and models in computational neuroscience, their impact on the field, and the remaining barriers. This lecture covers how FAIR practices affect personalized data models, including workflows, challenges, and how to improve these practices.

Difficulty level: Beginner

Duration: 13:16

Speaker: : Kelly Shen

Much like neuroinformatics, data science uses techniques from computational science to derive meaningful results from large complex datasets. In this session, we will explore the relationship between neuroinformatics and data science, by emphasizing a range of data science approaches and activities, ranging from the development and application of statistical methods, through the establishment of communities and platforms, and through the implementation of open-source software tools. Rather than rigid distinctions, in the data science of neuroinformatics, these activities and approaches intersect and interact in dynamic ways. Together with a panel of cutting-edge neuro-data-scientist speakers, we will explore these dynamics

This lecture covers how brainlife.io works, and how it can be applied to neuroscience data.

Difficulty level: Beginner

Duration: 10:14

Speaker: : Franco Pestilli

Course:

As a part of NeuroHackademy 2020, Tara Madhyastha (University of Washington), Andrew Crabb (AWS), and Ariel Rokem (University of Washington) give a lecture on Cloud Computing, focusing on Amazon Web Services.

This video is provided by the University of Washington eScience Institute.

Difficulty level: Beginner

Duration: 01:43:59

Speaker: :

Course:

Shawn Brown presents an overview of CBRAIN, a web-based platform that allows neuroscientists to perform computationally intensive data analyses by connecting them to high-performance-computing facilities across Canada and around the world.

This talk was given in the context of a Ludmer Centre event in 2019.

Difficulty level: Beginner

Duration: 56:07

Speaker: :

This lecture covers structured data, databases, federating neuroscience-relevant databases, ontologies.

Difficulty level: Beginner

Duration: 1:30:45

Speaker: : Maryann Martone

Course:

Since their introduction in 2016, the FAIR data principles have gained increasing recognition and adoption in global neuroscience. FAIR defines a set of high-level principles and practices for making digital objects, including data, software, and workflows, Findable, Accessible, Interoperable, and Reusable. But FAIR is not a specification; it leaves many of the specifics up to individual scientific disciplines to define. INCF has been leading the way in promoting, defining, and implementing FAIR data practices for neuroscience. We have been bringing together researchers, infrastructure providers, industry, and publishers through our programs and networks. In this session, we will hear some perspectives on FAIR neuroscience from some of these stakeholders who have been working to develop and use FAIR tools for neuroscience. We will engage in a discussion on questions such as: how is neuroscience doing with respect to FAIR? What have been the successes? What is currently very difficult? Where does neuroscience need to go?

This lecture covers FAIR atlases, from their background, their construction, and how they can be created in line with the FAIR principles.

Difficulty level: Beginner

Duration: 14:24

Speaker: : Heidi Kleven

Course:

Introduction to the Mathematics chapter of Datalabcc's "Foundations in Data Science" series.

Difficulty level: Beginner

Duration: 2:53

Speaker: : Barton Poulson

Course:

Primer on elementary algebra

Difficulty level: Beginner

Duration: 3:03

Speaker: : Barton Poulson

Course:

Primer on systems of linear equations

Difficulty level: Beginner

Duration: 5:24

Speaker: : Barton Poulson

Course:

How calculus relates to optimization

Difficulty level: Beginner

Duration: 8:43

Speaker: : Barton Poulson

Serving as good refresher, Shawn Grooms explains the maths and logic concepts that are important for programmers to understand, including sets, propositional logic, conditional statements, and more.

This compilation is courtesy of freeCodeCamp.

Difficulty level: Beginner

Duration: 01:00:07

Speaker: :

Linear algebra is the branch of mathematics concerning linear equations such as linear functions and their representations through matrices and vector spaces. As such, it underlies a huge variety of analyses in the neurosciences. This lesson provides a useful refresher which will facilitate the use of Matlab, Octave, and various matrix-manipulation and machine-learning software.

This lesson was created by RootMath.

Difficulty level: Beginner

Duration: 01:21:30

Speaker: :

This lecture provides an overview of depression (epidemiology and course of the disorder), clinical presentation, somatic co-morbidity, and treatment options.

Difficulty level: Beginner

Duration: 37:51

Speaker: : Barbara Sperner-Unterweger

Part 1 of 2 of a tutorial on statistical models for neural data

Difficulty level: Beginner

Duration: 1:45:48

Speaker: : Jonathan Pillow

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