This lesson introduces various methods in MATLAB useful for dealing with data generated by calcium imaging. 

This tutorial demonstrates how to use MATLAB to generate and visualize animations of calcium fluctuations over time. 

This tutorial instructs users how to use MATLAB to programmatically convert data from cells to a matrix.

In this tutorial, users will learn how to identify and remove background noise, or "blur", an important step in isolating cell bodies from image data. 

This lesson teaches users how MATLAB can be used to apply image processing techniques to identify cell bodies based on contiguity.

This tutorial demonstrates how to extract the time course of calcium activity from each clusters of neuron somata, and store the data in a MATLAB matrix.

This lesson demonstrates how to use MATLAB to implement a multivariate dimension reduction method, PCA, on time series data.

This is the first of two workshops on reproducibility in science, during which participants are introduced to concepts of FAIR and open science. After discussing the definition of and need for FAIR science, participants are walked through tutorials on installing and using Github and Docker, the powerful, open-source tools for versioning and publishing code and software, respectively.

This is a hands-on tutorial on PLINK, the open source whole genome association analysis toolset. The aims of this tutorial are to teach users how to perform basic quality control on genetic datasets, as well as to identify and understand GWAS summary statistics. 

This is a tutorial on using the open-source software PRSice to calculate a set of polygenic risk scores (PRS) for a study sample. Users will also learn how to read PRS into R, visualize distributions, and perform basic association analyses. 

This tutorial introduces pipelines and methods to compute brain connectomes from fMRI data. With corresponding code and repositories, participants can follow along and learn how to programmatically preprocess, curate, and analyze functional and structural brain data to produce connectivity matrices. 

This is a tutorial on designing a Bayesian inference model to map belief trajectories, with emphasis on gaining familiarity with Hierarchical Gaussian Filters (HGFs).

This lesson corresponds to slides 65-90 of the PDF below. 

This tutorial provides instruction on how to simulate brain tumors with TVB (reproducing publication: Marinazzo et al. 2020 Neuroimage). This tutorial comprises a didactic video, jupyter notebooks, and full data set for the construction of virtual brains from patients and health controls.