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In this talk the speakers will give a brief introduction of the Fenix Infrastructure and Service Offering, before focusing on Data Safety. The speaker will take the participants through the ETHZ-CSCS offering for EBRAINS and all the HBP Communities highlighting the Infrastructure role in a service implementation in respect of Security. Particular attention will be on showing what tools ETHZ-CSCS provides to a Portal/Service provider such as EBRAINS, MIP/HIP, TVB, NRP amongst others. Finally there will be given a quick glimpse into the future and the role that “multi-tenancy” will play.

Difficulty level: Intermediate
Duration: 20:05

This lesson continues from part one of the lecture Ontologies, Databases, and Standards, diving deeper into a description of ontologies and knowledg graphs. 

Difficulty level: Intermediate
Duration: 50:18
Speaker: : Jeff Grethe

This lecture focuses on ontologies for clinical neurosciences.

Difficulty level: Intermediate
Duration: 21:54

This tutorial provides instruction on how to simulate brain tumors with TVB (reproducing publication: Marinazzo et al. 2020 Neuroimage). This tutorial comprises a didactic video, jupyter notebooks, and full data set for the construction of virtual brains from patients and health controls.

Difficulty level: Intermediate
Duration: 10:01

This lesson introduces population models and the phase plane, and is part of the The Virtual Brain (TVB) Node 10 Series, a 4-day workshop dedicated to learning about the full brain simulation platform TVB, as well as brain imaging, brain simulation, personalised brain models, and TVB use cases.

Difficulty level: Intermediate
Duration: 1:10:41
Speaker: : Michael Schirner

This lesson introduces TVB-multi-scale extensions and other TVB tools which facilitate modeling and analyses of multi-scale data. 

Difficulty level: Intermediate
Duration: 36:10

This lecture delves into cortical (i.e., surface-based) brain simulations, as well as subcortical (i.e., deep brain) stimulations, covering the definitions, motivations, and implementations of both. 

Difficulty level: Intermediate
Duration: 39:05
Speaker: : Jil Meier

This lecture provides an introduction to entropy in general, and multi-scale entropy (MSE) in particular, highlighting the potential clinical applications of the latter. 

Difficulty level: Intermediate
Duration: 39:05
Speaker: : Jil Meier

This lecture gives an overview of how to prepare and preprocess neuroimaging (EEG/MEG) data for use in TVB.  

Difficulty level: Intermediate
Duration: 1:40:52
Speaker: : Paul Triebkorn

In this lecture, you will learn about various neuroinformatic resources which allow for 3D reconstruction of brain models. 

Difficulty level: Intermediate
Duration: 1:36:57
Speaker: : Michael Schirner

This lesson introduces the practical exercises which accompany the previous lessons on animal and human connectomes in the brain and nervous system. 

Difficulty level: Intermediate
Duration: 4:10
Speaker: : Dan Goodman

This lesson discusses a gripping neuroscientific question: why have neurons developed the discrete action potential, or spike, as a principle method of communication? 

Difficulty level: Intermediate
Duration: 9:34
Speaker: : Dan Goodman

Learn how to create a standard extracellular electrophysiology dataset in NWB using Python.

Difficulty level: Intermediate
Duration: 23:10
Speaker: : Ryan Ly

Learn how to create a standard calcium imaging dataset in NWB using Python.

Difficulty level: Intermediate
Duration: 31:04
Speaker: : Ryan Ly

In this tutorial, you will learn how to create a standard intracellular electrophysiology dataset in NWB using Python.

Difficulty level: Intermediate
Duration: 20:23
Speaker: : Pamela Baker

In this tutorial, you will learn how to use the icephys-metadata extension to enter meta-data detailing your experimental paradigm.

Difficulty level: Intermediate
Duration: 27:18
Speaker: : Oliver Ruebel

This lesson provides instructions on how to build and share extensions in NWB.

Difficulty level: Advanced
Duration: 20:29
Speaker: : Ryan Ly

Learn how to build custom APIs for extension.

Difficulty level: Advanced
Duration: 25:40
Speaker: : Andrew Tritt

This lesson provides instruction on advanced writing strategies in HDF5 that are accessible through PyNWB.

Difficulty level: Advanced
Duration: 23:00
Speaker: : Oliver Ruebel

In this tutorial, users learn how to create a standard extracellular electrophysiology dataset in NWB using MATLAB.

Difficulty level: Intermediate
Duration: 45:46
Speaker: : Ben Dichter