This is the first of two workshops on reproducibility in science, during which participants are introduced to concepts of FAIR and open science. After discussing the definition of and need for FAIR science, participants are walked through tutorials on installing and using Github and Docker, the powerful, open-source tools for versioning and publishing code and software, respectively.

Difficulty level: Intermediate

Duration: 1:20:58

Speaker: : Erin Dickie and Sejal Patel

This lesson describes the fundamentals of genomics, from central dogma to design and implementation of GWAS, to the computation, analysis, and interpretation of polygenic risk scores.

Difficulty level: Intermediate

Duration: 1:28:16

Speaker: : Dan Felsky

This lesson contains the slides (pptx) of a lecture discussing the necessary concepts and tools for taking into account population stratification and admixture in the context of genome-wide association studies (GWAS). The free-access software Tractor and its advantages in GWAS are also discussed.

Difficulty level: Intermediate

Duration:

Speaker: : Dan Felsky

This lesson is an overview of transcriptomics, from fundamental concepts of the central dogma and RNA sequencing at the single-cell level, to how genetic expression underlies diversity in cell phenotypes.

Difficulty level: Intermediate

Duration: 1:29:08

Speaker: : Shreejoy Tripathy

This tutorial covers the fundamentals of collaborating with Git and GitHub.

Difficulty level: Intermediate

Duration: 2:15:50

Speaker: : Elizabeth DuPre

This is the Introductory Module to the Deep Learning Course at CDS, a course that covered the latest techniques in deep learning and representation learning, focusing on supervised and unsupervised deep learning, embedding methods, metric learning, convolutional and recurrent nets, with applications to computer vision, natural language understanding, and speech recognition.

Difficulty level: Intermediate

Duration: 50:17

Speaker: : Yann LeCun and Alfredo Canziani

This module covers the concepts of gradient descent and the backpropagation algorithm and is a part of the Deep Learning Course at NYU's Center for Data Science.

Difficulty level: Intermediate

Duration: 1:51:03

Speaker: : Yann LeCun

This lecture covers the concept of parameter sharing: recurrent and convolutional nets and is a part of the Deep Learning Course at NYU's Center for Data Science.

Difficulty level: Intermediate

Duration: 1:59:47

Speaker: : Yann LeCun and Alfredo Canziani

This lecture covers the concept of convolutional nets in practice and is a part of the Deep Learning Course at NYU's Center for Data Science.

Difficulty level: Intermediate

Duration: 51:40

Speaker: : Yann LeCun

This lecture discusses the concept of natural signals properties and the convolutional nets in practice and is a part of the Deep Learning Course at NYU's Center for Data Science.

Difficulty level: Intermediate

Duration: 1:09:12

Speaker: : Alfredo Canziani

This lecture covers the concept of recurrent neural networks: vanilla and gated (LSTM) and is a part of the Deep Learning Course at NYU's Center for Data Science.

Difficulty level: Intermediate

Duration: 1:05:36

Speaker: : Alfredo Canziani

This lecture is a foundationational lecture for the concept of energy-based models with a particular focus on the joint embedding method and latent variable energy-based models (LV-EBMs) and is a part of the Deep Learning Course at NYU's Center for Data Science.

Difficulty level: Intermediate

Duration: 1:51:30

Speaker: : Yann LeCun

This lecture covers the concept of inference in latent variable energy based models (LV-EBMs) and is a part of the Deep Learning Course at NYU's Center for Data Science.

Difficulty level: Intermediate

Duration: 1:01:04

Speaker: : Alfredo Canziani

This lecture is a foundationational lecture for the concept of energy-based models with a particular focus on the joint embedding method and latent variable energy based models (LV-EBMs) and is a part of the Deep Learning Course at NYU's Center for Data Science.

Difficulty level: Intermediate

Duration: 1:48:53

Speaker: : Yann LeCun

This tutorial covers the concept of training latent variable energy based models (LV-EBMs) and is is a part of the Deep Learning Course at NYU's Center for Data Science.

Difficulty level: Intermediate

Duration: 1:04:48

Speaker: : Alfredo Canziani

This lecture covers advanced concepts of energy-based models. The lecture is a part of the Advanced Energy-Based Models module of the the Deep Learning Course at NYU's Center for Data Science. Prerequisites for this course include: Energy-Based Models I, Energy-Based Models II, and an Introduction to Data Science or a Graduate Level Machine Learning course.

Difficulty level: Advanced

Duration: 1:54:22

Speaker: : Yann LeCun

This lecture covers advanced concepts of energy-based models. The lecture is a part of the Advanced energy based models modules of the the Deep Learning Course at NYU's Center for Data Science. Prerequisites for this course include: Energy-Based Models I, Energy-Based Models II, Energy-Based Models III, and an Introduction to Data Science or a Graduate Level Machine Learning course.

Difficulty level: Advanced

Duration: 1:54:43

Speaker: : Yann LeCun

This tutorial covers LV-EBM to target prop to (vanilla, denoising, contractive, variational) autoencoder and is a part of the Advanced Energy-Based Models module of the the Deep Learning Course at NYU's Center for Data Science. Prerequisites for this course include: Energy-Based Models I, Energy-Based Models II, Energy-Based Models III, Energy-Based Models IV, and an Introduction to Data Science or a Graduate Level Machine Learning course.

Difficulty level: Advanced

Duration: 1:00:34

Speaker: : Alfredo Canziani

This lecture covers advanced concepts of energy-based models. The lecture is a part of the Advanced energy based models modules of the the Deep Learning Course at NYU's Center for Data Science. Prerequisites for this course include: Energy-Based Models I, Energy-Based Models II, Energy-Based Models III, Energy-Based Models IV, and an Introduction to Data Science or a Graduate Level Machine Learning course.

Difficulty level: Advanced

Duration: 2:00:28

Speaker: : Yann LeCun

This tutorial covers the concepts of autoencoders, denoising encoders, and variational autoencoders (VAE) with PyTorch, as well as generative adversarial networks and code. It is a part of the Advanced energy based models modules of the the Deep Learning Course at NYU's Center for Data Science. Prerequisites for this course include: Energy-Based Models I, Energy-Based Models II, Energy-Based Models III, Energy-Based Models IV, Energy-Based Models V, and an Introduction to Data Science or a Graduate Level Machine Learning course.

Difficulty level: Advanced

Duration: 1:07:50

Speaker: : Alfredo Canziani

- (-) Deep learning (25)
- Clinical neuroinformatics (2)
- Standards and Best Practices (1)
- Electroencephalography (EEG) (1)
- Bayesian networks (1)
- Biochemical networks (1)
- Brain networks (3)
- Neuroimaging (3)
- Simulation (1)
- Neurobiology (3)
- Clinical neuroscience (1)
- Computer Science (1)
- (-) Genomics (3)
- Data science (1)
- (-) Open science (2)