Skip to main content

This tutorial walks participants through the application of dynamic causal modelling (DCM) to fMRI data using MATLAB. Participants are also shown various forms of DCM, how to generate and specify different models, and how to fit them to simulated neural and BOLD data.

 

This lesson corresponds to slides 158-187 of the PDF below. 

Difficulty level: Advanced
Duration: 1:22:10

This lecture presents an overview of functional brain parcellations, as well as a set of tutorials on bootstrap agregation of stable clusters (BASC) for fMRI brain parcellation.

Difficulty level: Advanced
Duration: 50:28
Speaker: : Pierre Bellec

This tutorial covers LV-EBM to target prop to (vanilla, denoising, contractive, variational) autoencoder and is a part of the Advanced Energy-Based Models module of the the Deep Learning Course at NYU's Center for Data Science. Prerequisites for this course include: Energy-Based Models IEnergy-Based Models IIEnergy-Based Models III, Energy-Based Models IV, and an Introduction to Data Science or a Graduate Level Machine Learning course.

Difficulty level: Advanced
Duration: 1:00:34
Speaker: : Alfredo Canziani

This tutorial covers the concepts of autoencoders, denoising encoders, and variational autoencoders (VAE) with PyTorch, as well as generative adversarial networks and code. It is a part of the Advanced energy based models modules of the the Deep Learning Course at NYU's Center for Data Science. Prerequisites for this course include: Energy-Based Models IEnergy-Based Models IIEnergy-Based Models IIIEnergy-Based Models IV, Energy-Based Models V, and an Introduction to Data Science or a Graduate Level Machine Learning course.

Difficulty level: Advanced
Duration: 1:07:50
Speaker: : Alfredo Canziani

This tutorial covers advanced concept of energy-based models. The lecture is a part of the Associative Memories module of the the Deep Learning Course at NYU's Center for Data Science. 

Difficulty level: Advanced
Duration: 1:12:00
Speaker: : Alfredo Canziani

This tutuorial covers the concept of graph convolutional networks and is a part of the Deep Learning Course at NYU's Center for Data Science. Prerequisites for this module include: Modules 1 - 5 of this course and an Introduction to Data Science or a Graduate Level Machine Learning course.

Difficulty level: Advanced
Duration: 57:33
Speaker: : Alfredo Canziani

This lecture covers the concept of model predictive control and is a part of the Deep Learning Course at NYU's Center for Data Science. Prerequisites for this module include: Models 1-6 of this course and an Introduction to Data Science or a Graduate Level Machine Learning course.

Difficulty level: Advanced
Duration: 1:10:22
Speaker: : Alfredo Canziani

This lecture covers the concepts of emulation of kinematics from observations and training a policy. It is a part of the Deep Learning Course at NYU's Center for Data Science. Prerequisites for this module include: Models 1-6 of this course and an Introduction to Data Science or a Graduate Level Machine Learning course.

Difficulty level: Advanced
Duration: 1:01:21
Speaker: : Alfredo Canziani

This lecture covers the concept of predictive policy learning under uncertainty and is a part of the Deep Learning Course at NYU's Center for Data Science. Prerequisites for this module include: Models 1-6 of this course and an Introduction to Data Science or a Graduate Level Machine Learning course.

Difficulty level: Advanced
Duration: 1:14:44
Speaker: : Alfredo Canziani

This lecture continues on the topic of descent from the previous lesson, Optimization I. This lesson is a part of the Deep Learning Course at NYU's Center for Data Science. Prerequisites for this module include: Models 1-7 of this course and an Introduction to Data Science or a Graduate Level Machine Learning course.

Difficulty level: Advanced
Duration: 1:51:32
Speaker: : Alfredo Canziani

This lecture introduces neuroscience concepts and methods such as fMRI, visual respones in BOLD data, and the eccentricity of visual receptive fields. 

Difficulty level: Intermediate
Duration: 7:15
Speaker: : Mike X. Cohen

This tutorial walks users through the creation and visualization of activation flat maps from fMRI datasets. 

Difficulty level: Intermediate
Duration: 12:15
Speaker: : Mike X. Cohen

This tutorial demonstrates to users the conventional preprocessing steps when working with BOLD signal datasets from fMRI. 

Difficulty level: Intermediate
Duration: 12:05
Speaker: : Mike X. Cohen

In this tutorial, users will learn how to create a trial-averaged BOLD response and store it in a matrix in MATLAB. 

Difficulty level: Intermediate
Duration: 20:12
Speaker: : Mike X. Cohen

This tutorial teaches users how to create animations of BOLD responses over time, to allow researchers and clinicians to visualize time-course activity patterns.

Difficulty level: Intermediate
Duration: 12:52
Speaker: : Mike X. Cohen

This tutorial demonstrates how to use MATLAB to create event-related BOLD time courses from fMRI datasets. 

Difficulty level: Intermediate
Duration: 13:39
Speaker: : Mike X. Cohen

In this tutorial, users learn how to compute and visualize a t-test on experimental condition differences.

Difficulty level: Intermediate
Duration: 17:54
Speaker: : Mike X. Cohen

This lesson introduces various methods in MATLAB useful for dealing with data generated by calcium imaging. 

Difficulty level: Intermediate
Duration: 5:02
Speaker: : Mike X. Cohen

This tutorial demonstrates how to use MATLAB to generate and visualize animations of calcium fluctuations over time. 

Difficulty level: Intermediate
Duration: 15:01
Speaker: : Mike X. Cohen

This tutorial instructs users how to use MATLAB to programmatically convert data from cells to a matrix.

Difficulty level: Intermediate
Duration: 5:15
Speaker: : Mike X. Cohen