Course:

Lecture on functional brain parcellations and a set of tutorials on bootstrap agregation of stable clusters (BASC) for fMRI brain parcellation which were part of the 2019 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Difficulty level: Advanced

Duration: 50:28

Speaker: : Pierre Bellec

Learn how to build and share extensions in NWB

Difficulty level: Advanced

Duration: 20:29

Speaker: : Ryan Ly

Learn how to build custom APIs for extension

Difficulty level: Advanced

Duration: 25:40

Speaker: : Andrew Tritt

Learn how to handle writing very large data in PyNWB

Difficulty level: Advanced

Duration: 26:50

Speaker: : Andrew Tritt

Learn how to handle writing very large data in MatNWB

Difficulty level: Advanced

Duration: 16:18

Speaker: : Ben Dichter

Course:

This lesson provides an introduction to biologically detailed computational modelling of neural dynamics, including neuron membrane potential simulation and F-I curves.

Difficulty level: Intermediate

Duration: 8:21

Speaker: : Mike X. Cohen

Course:

In this lesson, users learn how to use MATLAB to build an adaptive exponential integrate and fire (AdEx) neuron model.

Difficulty level: Intermediate

Duration: 22:01

Speaker: : Mike X. Cohen

Course:

In this lesson, users learn about the practical differences between MATLAB scripts and functions, as well as how to embed their neuronal simulation into a callable function.

Difficulty level: Intermediate

Duration: 11:20

Speaker: : Mike X. Cohen

Course:

This lesson teaches users how to generate a frequency-current (F-I) curve, which describes the function that relates the net synaptic current (I) flowing into a neuron to its firing rate (F).

Difficulty level: Intermediate

Duration: 20:39

Speaker: : Mike X. Cohen

This lecture discusses the the importance and need for data sharing in clinical neuroscience.

Difficulty level: Intermediate

Duration: 25:22

Speaker: : Thomas Berger

This lecture gives insights into the Medical Informatics Platform's current and future data privacy model.

Difficulty level: Intermediate

Duration: 17:29

Speaker: : Yannis Ioannidis

This lecture gives an overview on the European Health Dataspace.

Difficulty level: Intermediate

Duration: 26:33

Speaker: : Licino Kustra Mano

Course:

This lesson is a general overview of overarching concepts in neuroinformatics research, with a particular focus on clinical approaches to defining, measuring, studying, diagnosing, and treating various brain disorders. Also described are the complex, multi-level nature of brain disorders and the data associated with them, from genes and individual cells up to cortical microcircuits and whole-brain network dynamics. Given the heterogeneity of brain disorders and their underlying mechanisms, this lesson lays out a case for multiscale neuroscience data integration.

Difficulty level: Intermediate

Duration: 1:09:33

Speaker: : Sean Hill

Course:

This lesson describes the principles underlying functional magnetic resonance imaging (fMRI), diffusion-weighted imaging (DWI), tractography, and parcellation. These tools and concepts are explained in a broader context of neural connectivity and mental health.

Difficulty level: Intermediate

Duration: 1:47:22

Speaker: : Erin Dickie and John Griffiths

Course:

This tutorial introduces pipelines and methods to compute brain connectomes from fMRI data. With corresponding code and repositories, participants can follow along and learn how to programmatically preprocess, curate, and analyze functional and structural brain data to produce connectivity matrices.

Difficulty level: Intermediate

Duration: 1:39:04

Speaker: : Erin Dickie and John Griffiths

Course:

In this tutorial on simulating whole-brain activity using Python, participants can follow along using corresponding code and repositories, learning the basics of neural oscillatory dynamics, evoked responses and EEG signals, ultimately leading to the design of a network model of whole-brain anatomical connectivity.

Difficulty level: Intermediate

Duration: 1:16:10

Speaker: : John Griffiths

This lesson breaks down the principles of Bayesian inference and how it relates to cognitive processes and functions like learning and perception. It is then explained how cognitive models can be built using Bayesian statistics in order to investigate how our brains interface with their environment.

This lesson corresponds to slides 1-64 in the PDF below.

Difficulty level: Intermediate

Duration: 1:28:14

Speaker: : Andreea Diaconescu

This is a tutorial on designing a Bayesian inference model to map belief trajectories, with emphasis on gaining familiarity with Hierarchical Gaussian Filters (HGFs).

This lesson corresponds to slides 65-90 of the PDF below.

Difficulty level: Intermediate

Duration: 1:15:04

Speaker: : Daniel Hauke

Explore how to setup an epileptic seizure simulation with the TVB graphical user interface. This lesson will show you how to program the epileptor model in the brain network to simulate a epileptic seizure originating in the hippocampus. It will also show how to upload and view mouse connectivity data, as well as give a short introduction to the python script interface of TVB.

Difficulty level: Intermediate

Duration: 58:06

Speaker: : Paul Triebkorn

Brain network reconstruction from empirical data is of key importance to generate personalized virtual brain models. This lecture will introduce the basic concepts of preprocessing structural, functional and diffusion weighted neuroimages. It highlights the latest methods and pipelines to extract structural as well as functional connectomes according to a multimodal parcellation.

Difficulty level: Intermediate

Duration: 1:17:32

Speaker: : Michael Schirner

- Clinical neuroinformatics (13)
- Standards and Best Practices (4)
- Bayesian networks (3)
- Digital brain atlasing (1)
- Neuroimaging (23)
- EBRAINS RI (6)
- Machine learning (1)
- Ontologies (1)
- (-) Standards and best practices (15)
- Tools (11)
- Clinical neuroscience (19)
- General neuroscience (6)
- (-) Computational neuroscience (45)
- Statistics (3)
- Computer Science (3)
- Genomics (8)
- (-) Data science (9)
- Open science (5)
- Neuroethics (3)