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Félix-Antoine Fortin from Calcul Québec gives an introduction to high-performance computing with the Compute Canada network, first providing an overview of use cases for HPC and then a hand-on tutorial.  Though some examples might seem specific to the Calcul Québec, all computing clusters in the Compute Canada network share the same software modules and environments.

 

The lesson was given in the context of the BrainHack School 2020.

Difficulty level: Beginner
Duration: 02:49:34
Speaker: :

The Canadian Open Neuroscience Platform (CONP) Portal is a web interface that facilitates open science for the neuroscience community by simplifying global access to and sharing of datasets and tools. The Portal internalizes the typical cycle of a research project, beginning with data acquisition, followed by data processing with published tools, and ultimately the publication of results with a link to the original dataset.

 

In this video, Samir Das and Tristan Glatard give a short overview of the main features of the CONP Portal.

Difficulty level: Beginner
Duration: 14:03
Speaker: :

Shawn Brown presents an overview of CBRAIN, a web-based platform that allows neuroscientists to perform computationally intensive data analyses by connecting them to high-performance-computing facilities across Canada and around the world.

 

This talk was given in the context of a Ludmer Centre event in 2019.

 

 

Difficulty level: Beginner
Duration: 56:07
Speaker: :

This module covers many of the types of non-invasive neurotech and neuroimaging devices including Electroencephalography (EEG), Electromyography (EMG), Electroneurography (ENG), Magnetoencephalography (MEG), functional Near-Infrared Spectroscopy (fNRIs), Magnetic Resonance Imaging (MRI), Positron Emission Tomography (PET), and Computed Tomography

Difficulty level: Beginner
Duration: 13:36
Speaker: : Harrison Canning

Lecture on functional brain parcellations and a set of tutorials on bootstrap agregation of stable clusters (BASC) for fMRI brain parcellation which were part of the 2019 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Difficulty level: Advanced
Duration: 50:28
Speaker: : Pierre Bellec

As a part of NeuroHackademy 2020, Tara Madhyastha (University of Washington), Andrew Crabb (AWS), and Ariel Rokem (University of Washington) give a lecture on Cloud Computing, focusing on Amazon Web Services

 

This video is provided by the University of Washington eScience Institute.

 

Difficulty level: Beginner
Duration: 01:43:59
Speaker: :

In this presentation by the OHBM OpenScienceSIG, Tom Shaw and Steffen Bollmann cover how containers can be useful for running the same software on different platforms and sharing analysis pipelines with other researchers. They demonstrate how to build docker containers from scratch, using Neurodocker, and cover how to use containers on an HPC with singularity.

 

 

Difficulty level: Beginner
Duration: 01:21:59

This module explains how neurons come together to create the networks that give rise to our thoughts. The totality of our neurons and their connection is called our connectome. Learn how this connectome changes as we learn, and computes information. We will also learn about physiological phenomena of the brain such as synchronicity that gives rise to brain waves.

Difficulty level: Beginner
Duration: 7:13
Speaker: : Harrison Canning

NWB: An ecosystem for neurophysiology data standardization

Difficulty level: Beginner
Duration: 29:53
Speaker: : Oliver Ruebel

Learn how to build and share extensions in NWB

Difficulty level: Advanced
Duration: 20:29
Speaker: : Ryan Ly

Learn how to build custom APIs for extension

Difficulty level: Advanced
Duration: 25:40
Speaker: : Andrew Tritt

Learn how to handle writing very large data in PyNWB

Difficulty level: Advanced
Duration: 26:50
Speaker: : Andrew Tritt

Learn how to handle writing very large data in MatNWB

Difficulty level: Advanced
Duration: 16:18
Speaker: : Ben Dichter

The landscape of scientific research is changing. Today’s researchers need to participate in large-scale collaborations, obtain and manage funding, share data, publish, and undertake knowledge translation activities in order to be successful. As per these increasing demands, Science Management is now a vital piece of the environment.

Difficulty level: Beginner
Duration: 18:13
Speaker: : Mojib Javadi

Brought to you by the New Digital Infrastructure Organization.

 

In the past five years, researchers have seen a growing number of research data management (RDM) policies being implemented by funders, publishers, and institutions. One key element in meeting these requirements, particularly in terms of data discovery, is using metadata, which helps make research data findable, accessible, interoperable and reusable (the FAIR principles). This session discussed the secret life of your dataset metadata: the ways in which, for many years to come, it will work non-stop to foster the visibility, reach, and impact of your work. We explored how metadata will help your dataset travel through the global research infrastructure, and how data repositories and discovery services can use this (meta)data to help launch your dataset into the world.

 

Connect with us! Follow us on Twitter at @NDRIO_NOIRN and @PortageRDM_GDR.

 

For more information, visit our website: https://engagedri.ca/

Difficulty level: Beginner
Duration: 59:58
Speaker: :

Brought to you by the Canadian Association of Research Libraries.

 

Data management plans, or DMPs, are one of the foundations of good research data management. This DMP-focused webinar will be of interest to researchers, graduate students, librarians, and research support stakeholders, and will provide foundational information on developing DMPs. Topics covered will include the importance and benefits of DMPs, how they support research excellence, and what makes a ‘good’ DMP, as well as a detailed look at their standard content. Resources to help with the development of DMPs – including bilingual training materials, guidance documents and Exemplar DMPs – will be presented, as well as an update on the activities of the Portage DMP Expert Group, including forthcoming resources. A brief overview of the DMP Assistant platform will be provided, while a second separate session will deliver an in-depth look at the latest version of this platform, including its key features.

 

Speaker: James Doiron, Research Data Management Services Coordinator, University of Alberta Libraries

Difficulty level: Beginner
Duration: 01:01:55
Speaker: :

Brought to you by the Canadian Association of Research Libraries.

 

Data management plans, or DMPs, are one of the foundations of good research data management. Hosted by the University of Alberta Library and supported by the Portage Network, the DMP Assistant is a national, open, bilingual data management planning (DMP) tool to help researchers better manage their data throughout the lifespan of a project. The tool develops a DMP by prompting researchers to answer a number of key data management questions, supported by best-practice guidance and examples. Building on the preceding DMP-focused webinar, this session will be of interest to researchers, graduate students, librarians, and research support stakeholders. Participants will take an in-depth look at the newly launched DMP Assistant 2.0, including all of its enhanced key features for both end-users and institutional administrators, as well as a brief look at the future of the platform.

 

Speaker: Robyn Nicholson, Data Management Planning Coordinator, Portage Network

Difficulty level: Beginner
Duration: 01:03:51
Speaker: :