In this lesson, the simulation of a virtual epileptic patient is presented as an example of advanced brain simulation as a translational approach to deliver improved clinical results. You will learn about the fundamentals of epilepsy, as well as the concepts underlying epilepsy simulation. By using an iPython notebook, the detailed process of this approach is explained step by step. In the end, you are able to perform simple epilepsy simulations your own.
This lesson discusses FAIR principles and methods currently in development for assessing FAIRness.
This lecture presents an overview of functional brain parcellations, as well as a set of tutorials on bootstrap agregation of stable clusters (BASC) for fMRI brain parcellation.
This lesson continues with the second workshop on reproducible science, focusing on additional open source tools for researchers and data scientists, such as the R programming language for data science, as well as associated tools like RStudio and R Markdown. Additionally, users are introduced to Python and iPython notebooks, Google Colab, and are given hands-on tutorials on how to create a Binder environment, as well as various containers in Docker and Singularity.
This lesson provides a brief overview of the Python programming language, with an emphasis on tools relevant to data scientists.
In this lesson, users can follow along as a spaghetti script written in MATLAB is turned into understandable and reusable code living happily in a powerful GitHub repository.
This lesson gives a quick walkthrough the Tidyverse, an "opinionated" collection of R packages designed for data science, including the use of readr, dplyr, tidyr, and ggplot2.
This lecture covers FAIR atlases, including their background and construction, as well as how they can be created in line with the FAIR principles.
This lecture covers the benefits and difficulties involved when re-using open datasets, and how metadata is important to the process.
This lesson provides a quick tour of some data repositories and how to download and manipulate data from them.
This lesson provides instructions on how to build and share extensions in NWB.
Learn how to build custom APIs for extension.
This lesson provides instruction on advanced writing strategies in HDF5 that are accessible through PyNWB.
This lesson provides a tutorial on how to handle writing very large data in MatNWB.
This lecture provides reviews some standards for project management and organization, including motivation from the view of the FAIR principles and improved reproducibility.
Serving as good refresher, this lesson explains the maths and logic concepts that are important for programmers to understand, including sets, propositional logic, conditional statements, and more.
This compilation is courtesy of freeCodeCamp.
This lesson provides a useful refresher which will facilitate the use of Matlab, Octave, and various matrix-manipulation and machine-learning software.
This lesson was created by RootMath.
This lesson gives an in-depth introduction of ethics in the field of artificial intelligence, particularly in the context of its impact on humans and public interest. As the healthcare sector becomes increasingly affected by the implementation of ever stronger AI algorithms, this lecture covers key interests which must be protected going forward, including privacy, consent, human autonomy, inclusiveness, and equity.
This lecture picks up from the previous lesson, providing an overview of neuroimaging techniques and their clinical applications.
This lesson provides a basic introduction to clinical presentation of schizophrenia, its etiology, and current treatment options.