This tutorial describes the isPCR tool and demonstrates how to use it for predicting the size and location of PCR products and visualizing the genomic location on the genome. The tool operates on DNA templates for all organisms, and on human and mouse DNA/RNA. It also demonstrates how to use the Browser to obtain DNA sequences from the genome.

This tutorial describes the dbSNP resources in the UCSC Genome Browser, including display conventions and the subdivision of the data into several useful subset tracks, especially the Common SNPs. There is also a discussion about changes to the genome assemblies from one version to another, and of two ways to navigate between different assemblies of the human genome in the Browser.

This tutorial demonstrates the UCSC Genome Browser Data Integrator, a tool that allows combination and intersection of data from up to five primary tables. In the example, data are extracted showing SNPs, genes, and phenotypes from a genomic region.

This tutorial shows how to obtain coordinates of genes, then input those coordinates into the UCSC Genome Browser for display. The regions do not have to be continuous in the genome.

This tutorial demonstrates the Multi-Region Exon-Only Display mode of the UCSC Genome Browser.

This tutorial demonstrates viewing alternate haplotypes with the UCSC Genome Browser.

The Genome Browser in the Cloud (GBiC) program is a convenient tool that automates the setup of a UCSC Genome Browser mirror​ on a cloud instance or a dedicated physical server.

This tutorial gives a demonstration of species/genome assembly selection page (Gateway) on the UCSC Genome Browser.

This tutorial demonstrates how to get the coordinates and sequences of exons using the UCSC Genome Browser.

This tutorial will demonstrate how to locate amino acid numbers for coding genes using the UCSC Genome Browser.

This tutorial will demonstrate how to find the tables in the UCSC database that are associated with the data tracks in the Genome Browser graphical viewer.

This tutorial shows how to navigate between exons of a gene using the UCSC Genome Browser.

This lesson contains both a lecture and a tutorial component. The lecture (0:00-20:03 of YouTube video) discusses both the need for intersectional approaches in healthcare as well as the impact of neglecting intersectionality in patient populations. The lecture is followed by a practical tutorial in both Python and R on how to assess intersectional bias in datasets. Links to relevant code and data are found below. 

This lecture discusses what defines an integrative approach regarding research and methods, including various study designs and models which are appropriate choices when attempting to bridge data domains; a necessity when whole-person modelling. 

This lesson gives an introductory presentation on how data science can help with scientific reproducibility.

This video will document the process of uploading data into a brainlife project using ezBIDS.

This short video shows how data in a brainlife.io publication can be opened from a DOI inside a published article. The video provides an example of how the DOI deposited on the journal can be opened with a web browser to redirect to the associated data publication on brainlife.io.

Research Resource Identifiers (RRIDs) are ID numbers assigned to help researchers cite key resources (e.g., antibodies, model organisms, and software projects) in biomedical literature to improve the transparency of research methods.

The lecture provides an overview of the core skills and practical solutions required to practice reproducible research.

This lecture covers the biomedical researcher's perspective on FAIR data sharing and the importance of finding better ways to manage large datasets.