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Enabling neuroscience research using high performance computing

Difficulty level: Beginner
Duration: 39:27
Speaker: : Subha Sivagnanam

This lecture and tutorial focuses on measuring human functional brain networks. The lecture and tutorial were part of the 2019 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Difficulty level: Intermediate
Duration: 50:44
Speaker: : Caterina Gratton

This module covers fMRI data, including creating and interpreting flat maps, exploring variability and average responses, and visual eccentricity. You will learn about processing BOLD signals, trial-averaging, and t-tests. The MATLAB code introduces data animations, multicolor visualizations, and linear indexing.

Difficulty level: Intermediate
Duration: 7:15
Speaker: : Mike X. Cohen

This module covers fMRI data, including creating and interpreting flatmaps, exploring variability and average responses, and visual eccentricity. You will learn about processing BOLD signals, trial-averaging, and t-tests. The MATLAB code introduces data animations, multicolor visualizations, and linear indexing.

Difficulty level: Intermediate
Duration: 12:15
Speaker: : Mike X. Cohen

This module covers fMRI data, including creating and interpreting flatmaps, exploring variability and average responses, and visual eccentricity. You will learn about processing BOLD signals, trial-averaging, and t-tests. The MATLAB code introduces data animations, multicolor visualizations, and linear indexing.

Difficulty level: Intermediate
Duration: 12:05
Speaker: : Mike X. Cohen

This module covers fMRI data, including creating and interpreting flatmaps, exploring variability and average responses, and visual eccentricity. You will learn about processing BOLD signals, trial-averaging, and t-tests. The MATLAB code introduces data animations, multicolor visualizations, and linear indexing.

Difficulty level: Intermediate
Duration: 20:12
Speaker: : Mike X. Cohen

This module covers fMRI data, including creating and interpreting flatmaps, exploring variability and average responses, and visual eccentricity. You will learn about processing BOLD signals, trial-averaging, and t-tests. The MATLAB code introduces data animations, multicolor visualizations, and linear indexing.

Difficulty level: Intermediate
Duration: 12:52
Speaker: : Mike X. Cohen

This module covers fMRI data, including creating and interpreting flatmaps, exploring variability and average responses, and visual eccentricity. You will learn about processing BOLD signals, trial-averaging, and t-tests. The MATLAB code introduces data animations, multicolor visualizations, and linear indexing.

Difficulty level: Intermediate
Duration: 13:39
Speaker: : Mike X. Cohen

This module covers fMRI data, including creating and interpreting flatmaps, exploring variability and average responses, and visual eccentricity. You will learn about processing BOLD signals, trial-averaging, and t-tests. The MATLAB code introduces data animations, multicolor visualizations, and linear indexing.

Difficulty level: Intermediate
Duration: 17:54
Speaker: : Mike X. Cohen

You will learn about working with calcium imaging data, including image processing to remove background "blur," identifying cells based on thresholded spatial contiguity, time series filtering, and principal components analysis (PCA). The MATLAB code shows data animations, capabilities of the image processing toolbox, and PCA.

Difficulty level: Intermediate
Duration: 5:02
Speaker: : Mike X. Cohen

You will learn about working with calcium imaging data, including image processing to remove background "blur," identifying cells based on thresholded spatial contiguity, time series filtering, and principal components analysis (PCA). The MATLAB code shows data animations, capabilities of the image processing toolbox, and PCA.

Difficulty level: Intermediate
Duration: 15:01
Speaker: : Mike X. Cohen

You will learn about working with calcium imaging data, including image processing to remove background "blur," identifying cells based on thresholded spatial contiguity, time series filtering, and principal components analysis (PCA). The MATLAB code shows data animations, capabilities of the image processing toolbox, and PCA.

Difficulty level: Intermediate
Duration: 5:15
Speaker: : Mike X. Cohen

You will learn about working with calcium imaging data, including image processing to remove background "blur," identifying cells based on thresholded spatial contiguity, time series filtering, and principal components analysis (PCA). The MATLAB code shows data animations, capabilities of the image processing toolbox, and PCA.

Difficulty level: Intermediate
Duration: 17:08
Speaker: : Mike X. Cohen

You will learn about working with calcium imaging data, including image processing to remove background "blur," identifying cells based on thresholded spatial contiguity, time series filtering, and principal components analysis (PCA). The MATLAB code shows data animations, capabilities of the image processing toolbox, and PCA.

Difficulty level: Intermediate
Duration: 11:23
Speaker: : Mike X. Cohen

You will learn about working with calcium imaging data, including image processing to remove background "blur," identifying cells based on thresholded spatial contiguity, time series filtering, and principal components analysis (PCA). The MATLAB code shows data animations, capabilities of the image processing toolbox, and PCA.

Difficulty level: Intermediate
Duration: 22:41
Speaker: : Mike X. Cohen

You will learn about working with calcium imaging data, including image processing to remove background "blur," identifying cells based on thresholded spatial contiguity, time series filtering, and principal components analysis (PCA). The MATLAB code shows data animations, capabilities of the image processing toolbox, and PCA.

Difficulty level: Intermediate
Duration: 17:19
Speaker: : Mike X. Cohen
Course:

Longitudinal Online Research and Imaging System (LORIS) is a web-based data and project management software for neuroimaging research studies. It is an open source framework for storing and processing behavioural, clinical, neuroimaging and genetic data. LORIS also makes it easy to manage large datasets acquired over time in a longitudinal study, or at different locations in a large multi-site study.

Difficulty level: Beginner
Duration: 0:35
Speaker: : Samir Das

This talk highlights a set of platform technologies, software, and data collections that close and shorten the feedback cycle in research. 

Difficulty level: Beginner
Duration: 57:52
Speaker: : Satrajit Ghosh

An agent for reproducible neuroimaging

Difficulty level: Beginner
Duration: 1:00:10
Speaker: : David Kennedy

This lecture was part of the 2018 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Difficulty level: Intermediate
Duration: 1:25:05
Speaker: : Satrajit Ghosh