Multi-Region trilogy part 2: Viewing alternate haplotypes with the UCSC Genome Browser
Multi-Region trilogy part 2: Viewing alternate haplotypes with the UCSC Genome Browser
This tutorial demonstrates viewing alternate haplotypes with the UCSC Genome Browser.
Topics covered in this lesson
- Set up the Genome Browser display
- View alternate sequences
- Fetch sequence of right end of alt
- Fetch sequence of left end of alt
- Blat the alt ends
- Substitute alt ends into chromosome
- Track lifted from hg19 lacks hg38 annotations on alt
- Remove alt from main chromosome
External Links
Prerequisites
Tutorial: Multi-Region trilogy part 1: Exon-only display in the UCSC Genome Browser
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