#1 Hands-On Analysis Tutorial

#1 Hands-On Analysis Tutorial

By
MetaCell
Difficulty level
Beginner
Speaker
Daniel Aharoni, Phil Dong
Type
Tutorial
Video
Duration
01:28:03
Topic
Neuroimaging
Calcium imaging

Running your own Minion session in the MetaCell cloud using jupityr notebooks

Topics covered in this lesson
  • Introduction
  • Goals
  • Notebook & interface
  • Workflow pipeline
  • Setting parameters
  • Importing functions
  • Hard drive space
  • Memory limit
  • More questions
  • Preprocessing
  • VRR
  • Visualization
External Links
Miniscope-v4 wiki
MetaCell Workspace - Calcium Imaging Analysis in Cloud
Link to Miniscope
Link to Minian: An open-source miniscope analysis pipeline
Link to Data Analysis Slack Channel
Back to the course
2021 Virtual Miniscope Workshop