This workshop provides basic knowledge on personalized brain network modeling using the open-source simulation platform The Virtual Brain (TVB). Participants will gain theoretical knowledge and apply this knowledge to construct brain models, process multimodal neuroimaging data for creating individual brain, run simulations, and use supporting neuroinformatics tools such as collaboratories, pipelines, workflows, and data repositories. Participants will be able to operate the neuroinformatics platform TVB. The following topics will be covered:
The Virtual Brain Node#10 Workshop: Personalized Multi-Scale Brain Simulation
Course Features
Theoretical background of large-scale brain network modeling and concepts of nonlinear dynamics (bifurcation analysis, phase plane, flows on manifolds)
Architecture of TVB simulator
Interacting with TVB using GUI and CLI
Modeling resting-state networks activity in human, mouse, and macaque brain
Parameter optimization and model inference
Visualization of multimodal brain dynamics
Application of brain network modeling for clinical questions such as in epilepsy
Multiscale co-simulation using TVB and microscopic simulators such as NEST
Personalization pipelines: processing of brain images (MRI, fMRI, DTI, PET) and electrophysiological data (EEG, MEG) for individualization of brain network model
Running workflows on high performance computers (HPC)
Making use of and contributing to collaborative informatics simulation platforms such as Human Brain Project’s EBRAINS
Lessons of this Course
1
1
Duration:
1:10:41
Speaker:
This presentation by Dr. Michael Schirner population models and phase plane is part of the TVB Node 10 series, a 4 day workshop dedicated to learning about The Virtual Brain, brain imaging, brain simulation, personalised brain models, TVB use cases, etc... TVB is a full brain simulation platform.
2
2
Duration:
23:03
Tutorial on importing and creating brain models in The Virtual Brain by Patrik Bey is part of the TVB Node 10 series, a 4 day workshop dedicated to learning about The Virtual Brain, brain imaging, brain simulation, personalised brain models, TVB use cases, etc... TVB is a full brain simulation platform.
3
3
Duration:
1:29:13
Speaker:
This tutorial by Paul Triebkorn on how to simulate using TVB is part of the TVB Node 10 series, a 4 day workshop dedicated to learning about The Virtual Brain, brain imaging, brain simulation, personalised brain models, TVB use cases, etc. TVB is a full brain simulation platform.
4
4
Duration:
42:43
Speaker:
This tutorial on simulating The Virutal Mouse Brain by Patrik Bey is part of the TVB Node 10 series, a 4 day workshop dedicated to learning about The Virtual Brain, brain imaging, brain simulation, personalised brain models, TVB use cases, etc... TVB is a full brain simulation platform.
5
5
Duration:
36:10
Speaker:
This presentation by Dionysios Perdikis is part of the TVB Node 10 series, a 4 day workshop dedicated to learning about The Virtual Brain, brain imaging. brain simulation. personalised brain models, TVB use cases, etc. TVB is a full brain simulation platform.
6
6
Duration:
1:00:08
Speaker:
This tutorlal on modeling a virtual macaque brain by Julie Courtiol is part of the TVB Node 10 series, a 4 day workshop dedicated to learning about The Virtual Brain, brain imaging, brain simulation, personalised brain models, TVB use cases, etc. TVB is a full brain simulation platform.
7
7
Duration:
39:05
Speaker:
This lecture on surface-based simulations and deep brain stimulations by Jil Meier is part of the TVB Node 10 series, a 4 day workshop dedicated to learning about The Virtual Brain, brain imaging, brain simulation, personalised brain models, TVB use cases, etc. TVB is a full brain simulation platform.
8
8
Duration:
39:05
Speaker:
This lecture on multi-scale entropy by Jil Meier is part of the TVB Node 10 series, a 4 day workshop dedicated to learning about The Virtual Brain, brain imaging, brain simulation, personalised brain models, TVB use cases, etc. TVB is a full brain simulation platform.
9
9
Duration:
1:40:52
Speaker:
This lecture on generating TVB ready imaging data by Paul Triebkorn is part of the TVB Node 10 series, a 4 day workshop dedicated to learning about The Virtual Brain, brain imaging, brain simulation, personalised brain models, TVB use cases, etc. TVB is a full brain simulation platform.
10
10
Duration:
1:36:57
Speaker:
This lecture on generating 3D brain model outside The Virtual Brain by Michael Schirner is part of the TVB Node 10 series, a 4 day workshop dedicated to learning about The Virtual Brain, brain imaging, brain simulation, personalised brain models, TVB use cases, etc... TVB is a full brain simulation platform.
11
11
Duration:
37:12
Speaker:
This lecture on modeling epilepsy using TVB by Julie Courtiol is part of the TVB Node 10 series, a 4 day workshop dedicated to learning about The Virtual Brain, brain imaging, brain simulation, personalised brain models, TVB use cases, etc. TVB is a full brain simulation platform.
